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Table 2 Top 5 predominant operational taxonomic units (OTUs) at (a) the top and (b) port 4 of the reactor under the neutral and acid conditions

From: Hydraulic retention time and pH affect the performance and microbial communities of passive bioreactors for treatment of acid mine drainage

Condition

HRT (h)

OTU number

Relative abundance (%)

Closest relative species

Sequence similarity (%)

Accession number

Phylum or class

(a)

 Neutral

6

32917

57.94

Polaromonas hydrogenivorans

100

KU179860

Betaproteobacteria

23591

21.63

Flavobacterium johnsoniae

100

EU984149

Bacteroidetes

90098

6.48

Pseudomonas extremaustralis

100

KU508802

Gammaproteobacteria

103770

2.37

Arthrospira platensis

86.3

NR125711

Cyanobacteria

21834

1.41

Variovorax boronicumulans

96.0

GQ205102

Betaproteobacteira

5

71905

44.71

Dechloromonas aromatica

100

NR074748

Betaproteobacteria

87319

31.50

Novosphingobium sediminicola

100

KU297717

Alphaproteobacteria

58036

2.19

Candidatus Symbiothrix dinenymphae

84.3

AB088917

Bacteroidetes

32917

1.89

Polaromonas hydrogenivorans

100

KU179860

Betaproteobacteria

59736

1.81

Paludibacter propionicigenes

98.4

AB910740

Bacteroidetes

 Acid

20

77981

53.63

Clostridium saccharobutylicum

100

GU060306

Firmicutes

103770

7.12

Arthrospira platensis

86.3

NR125711

Cyanobacteria

16806

6.34

Clostridium bowmani

98.0

NR114879

Firmicutes

80315

5.40

Clostridium akagii

99.2

NR025352

Firmicutes

68792

3.56

Bacteroides graminisolvens

94.1

KT302372

Bacteroidetes

7

90098

37.72

Pseudomonas extremaustralis

100

KU508802

Gammaproteobacteria

59736

5.93

Paludibacter propionicigenes

98.4

AB910740

Bacteroidetes

61127

5.84

Microbacter margulisiae

97.6

NR126216

Bacteroidetes

30357

2.99

Acidiphilium rubrum

100

KC924949

Alphaproteobacteria

102362

2.60

Stenotrophomonas maltophilia

100

KT825837

Gammaproteobacteria

(b)

 Neutral

6

58036

24.35

Candidatus Symbiothrix dinenymphae

84.3

AB088917

Bacteroidetes

68792

9.31

Bacteroides graminisolvens

94.1

KT302372

Bacteroidetes

16806

8.00

Clostridium bowmani

98.0

NR114879

Firmicutes

59736

6.87

Paludibacter propionicigenes

98.4

AB910740

Bacteroidetes

26361

5.97

Trichococcus pasteurii

100.0

KR857435

Firmicutes

5

58670

11.87

OP11 uncultured bacterium

91.4

UEU68664

Candidate phylum OP11

64300

9.30

Thiobacillus thioparus

100

KC542801

Betaproteobacteria

19080

9.12

Sediminibacterium goheungense

100

NR133854

Bacteroidetes

26361

7.73

Trichococcus pasteurii

100

KR857435

Firmicutes

96149

6.57

Bifidobacterium cuniculi

76.5

LC071801

Actinobacteria

 Acid

20

59736

16.62

Paludibacter propionicigenes

98.4

AB910740

Bacteroidetes

103278

11.15

Desulfatirhabdium butyrativorans

94.5

NR043578

Deltaproteobacteria

68792

7.38

Bacteroides graminisolvens

94.1

KT302372

Bacteroidetes

16806

5.36

Clostridium bowmani

98.0

NR114879

Firmicutes

85528

5.27

Psychrosinus fermentans

98.8

NR115860

Firmicutes

7

58670

29.61

OP11 uncultured bacterium

91.4

UEU68664

Candidate phylum OP11

94556

17.64

Paludibacter propionicigenes

98.4

AB910740

Bacteroidetes

90098

6.43

Pseudomonas extremaustralis

100

KU508802

Gammaproteobacteria

20362

5.26

Desulfovibrio mexicanus

99.2

NR028776

Deltaproteobacteria

31360

3.82

Paludibacter propionicigenes

94.5

AB910740

Bacteroidetes