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Table 3 Identified ORFs in the chromosome associated with organic acid and sugar metabolism of P. mendocina strain S5.2

From: Phenotypic and genomic survey on organic acid utilization profile of Pseudomonas mendocina strain S5.2, a vineyard soil isolate

Locus tag

Annotation/predicted Role

ORF

Position in genome

Size (bp)

Orientation

Succinic acid (Succinate + ubiquinone → fumarate + ubiquinol)

DW68_012890

Succinate dehydrogenase (iron–sulfur subunit)

sdhB

2,790,535–2,791,242

708

DW68_012895

Succinate dehydrogenase (flavoprotein subunit)

sdhA

2,791,254–2,793,026

1773

DW68_012900

Succinate dehydrogenase (cytochrome b small subunit)

sdhD

2,793,030–2,793,398

369

DW68_012905

Succinate dehydrogenase (cytochrome b560 subunit)

sdhC

2,793,392–2,793,766

374

Lactic acid

DW68_005140

d-Lactate dehydrogenase

dld

1,090,088–1,091,806

1719

DW68_005145

l-Lactate dehydrogenase

lldD

1,091,811–1,092,950

1140

DW68_005150

l-Lactate permease

lldP

1,093,035–1,094,726

1692

DW68_005155

Lactate responsive regulator

lldR

1,095,022–1,095,789

768

Malic acid (malate oxaloacetate)

DW68_020815

Malate dehydrogenase

sfcA

4,486,244–4,487,512

1269

Malic acid (malate → oxaloacetate)

DW68_008120

Malate:quinone oxidoreductase

mqo

1,719,586–1,721,193

1608

Fumaric acid (fumarate Malate)

DW68_007085

Fumarate hydratase class I

fumA

1,503,228–1,504,751

1524

DW68_014875

Fumarate hydratase class II

fumC

3,205,005–3,206,399

1395

Citric acid (citrate → isocitrate)

DW68_010115

Aconitate hydratase A

acnA

2,182,629–2,185,370

2742

DW68_013280

Aconitate hydratase B

acnB

2,870,427–2,873,027

2601