Table 3 Identified ORFs in the chromosome associated with organic acid and sugar metabolism of P. mendocina strain S5.2
Locus tag | Annotation/predicted Role | ORF | Position in genome | Size (bp) | Orientation |
|---|---|---|---|---|---|
Succinic acid (Succinate + ubiquinone → fumarate + ubiquinol) | |||||
DW68_012890 | Succinate dehydrogenase (iron–sulfur subunit) | sdhB | 2,790,535–2,791,242 | 708 | ← |
DW68_012895 | Succinate dehydrogenase (flavoprotein subunit) | sdhA | 2,791,254–2,793,026 | 1773 | ← |
DW68_012900 | Succinate dehydrogenase (cytochrome b small subunit) | sdhD | 2,793,030–2,793,398 | 369 | ← |
DW68_012905 | Succinate dehydrogenase (cytochrome b560 subunit) | sdhC | 2,793,392–2,793,766 | 374 | ← |
Lactic acid | |||||
DW68_005140 | d-Lactate dehydrogenase | dld | 1,090,088–1,091,806 | 1719 | ← |
DW68_005145 | l-Lactate dehydrogenase | lldD | 1,091,811–1,092,950 | 1140 | ← |
DW68_005150 | l-Lactate permease | lldP | 1,093,035–1,094,726 | 1692 | ← |
DW68_005155 | Lactate responsive regulator | lldR | 1,095,022–1,095,789 | 768 | → |
Malic acid (malate ⇌ oxaloacetate) | |||||
DW68_020815 | Malate dehydrogenase | sfcA | 4,486,244–4,487,512 | 1269 | ← |
Malic acid (malate → oxaloacetate) | |||||
DW68_008120 | Malate:quinone oxidoreductase | mqo | 1,719,586–1,721,193 | 1608 | → |
Fumaric acid (fumarate ⇌ Malate) | |||||
DW68_007085 | Fumarate hydratase class I | fumA | 1,503,228–1,504,751 | 1524 | ← |
DW68_014875 | Fumarate hydratase class II | fumC | 3,205,005–3,206,399 | 1395 | → |
Citric acid (citrate → isocitrate) | |||||
DW68_010115 | Aconitate hydratase A | acnA | 2,182,629–2,185,370 | 2742 | → |
DW68_013280 | Aconitate hydratase B | acnB | 2,870,427–2,873,027 | 2601 | → |