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Table 3 Differences in pha genes transcription between exponential growth (24 h) and stationary phase (41 h) expressed in RPKM

From: Medium-chain-length polyhydroxyalkanoates synthesis by Pseudomonas putida KT2440 relA/spoT mutant: bioprocess characterization and transcriptome analysis

Gene

Locus tag

Description

RPKM 24 h

RPKM 41 h

Fold change

phaC1

PP_5003

PHA polymerase

638.8

834.8

1.3

Up

phaZ

PP_5004

PHA depolymerase

128.6

161.2

1.3

UP

phaC2

PP_5005

PHA polymerase

164.8

183.2

1.1

UP

phaD

PP_5006

Transcriptional regulator

216.6

197.5

1.1

Down

phaF

PP_5007

PHA granule-associated

6550.2

9404.0

1.4

Up

phaI

PP_5008

PHA granule-associated

3360.2

5976.8

1.8

Up

phaG

PP_1408

Acyl-transferase

538.02

3179.0

5.9

Up