Table 2 Phylogenetic frequency and affiliation of bacteria on hemp fibres retted for different times
Phylum | Bacterial species | % of total bacterial communitya Field retting time (day) | Accession number | ||||
|---|---|---|---|---|---|---|---|
Genus | Species | Old (similarity-%) new | |||||
0 | 7 | 14 | 20 | ||||
α-Proteo-bacteria | Rhizobium | soli | 0 | 14 [1] | 17 [2] | 16 [5] | NR115996 (97%) LT622055 |
Sphingomonas | aerolata | 0 | 0 | 8 [1] | 3 [1] | NR042130 (98%) LT622056 | |
ß-Proteo-bacteria | Massilia | aurea | 0 | 14 [1] | 25 [3] | 16 [5] | NR042502 (99%) LT622057 |
γ-Proteobacteria | Erwinia | aphidicola | 0 | 0 | 8 [1] | 3 [1] | NR104724 (99%) LT622058 |
Pantoea | agglomerans brenneri | 0 | 0 | 0 | 16 [5] | NR041978 (99%) LT622059 | |
0 | 0 | 0 | 3 [1] | NR116748 (99%) LT622060 | |||
Pseudomonas | argentinensis rhizosphaera syringae | 0 | 14 [1] | 0 | 10 [3] | NR043115 (97% LT622061 | |
0 | 14 [1] | 8 [1] | 3 [1] | NR029063 (99%) LT622062 | |||
0 | 0 | 8 [1] | 3 [1] | NR074597 (99%) LT622063 | |||
Shigella | sonnei | 0 | 29 [2] | 8 [1] | 0 | NR074894 (96%) LT622064 | |
Bacteroidetes | Chryseobacterium | scophthalmum | 0 | 0 | 0 | 6 [2] | NR025386 (97%) LT622065 |
Hymenobacter | ginsengisoli norwichensis | 0 | 0 | 0 | 3 [1] | NR108904 (96%) LT622066 | |
0 | 0 | 0 | 10 [3] | NR042172 (99%) LT622067 | |||
Pedobacter | hartonius namyangjuensis | 0 | 0 | 8 [1] | 3 [1] | NR104917 (95%) LT622068 | |
0 | 0 | 0 | 3 [1] | NR113980 (97%) LT622069 | |||
Totals % [no. clones] | 0 [0] | 100 [7] | 100 [12] | 100 [31] | |||