Table 2 rRNA-targeted oligonucleotide probe used in this study
Probe | Specific | Sequence (5′–3′) | FAa (%) | Reference |
|---|---|---|---|---|
EUB | GCTGCCTCCCGTAGGAGT | |||
EUBII | Almost all bacteria | GCAGCCACCCGTAGGTGT | 0–80 | Daims et al. (1999) |
EUBIII | GCTGCCACCCGTAGGTGT | |||
Nso1225 | Betaproteobacterial ammonia-oxidizing bacteria | CGCCATTGTATTACGTGTGA | 35 | Mobarry et al. (1996) |
NEU | Most halophilic and halotolerant Nitrosomonas spp. | CCCCTCTGCTGCACTCTA | 40b | Wagner et al. (1995) |
NmV | Nitrosococcus mobilis | TCCTCAGAGACTACGCGG | 35 | Pommerening et al. (1996) |
Cluster6a192 | Nitrosomonas oligotropha lineage | CTTTCGATCCCCTACTTTCC | 35 | Adamczyk et al. (2003) |
Nsm156 | Nitrosomonas spp., Nitrosococcus mobilis | TATTAGCACATCTTTCGAT | 5 | Mobarry et al. (1996) |
Nsv443 | Nitrosospira spp. | CCGTGACCGTTTCGTTCCG | 30 | Mobarry et al. (1996) |
Ntspa712 | Phylum Nitrospirae | CGCCTTCGCCACCGGCCTTCC | 50c | Daims et al. (2001) |
Ntspa662 | Genus Nitrospira | GGAATTCCGCGCTCCTCT | 35 | Daims et al. (2001) |
NIT3 | Genus Nitrobacter | CCTGTGCTCCATGCTCCG | 40 | Wagner et al. (1996) |