Table 1 List of queries used for blast analysis against genomes of thermophilic bacteria
From: Thermophilic bacteria are potential sources of novel Rieske non-heme iron oxygenases
Target gene | Query | Type | Organism | GenBank accession no. |
|---|---|---|---|---|
RO α-subunit | Naphthalene dioxygenase (NahAc) | A-IIIαβ | Pseudomonas putida NCIB 9816-4 | AAO64274 |
Benzoate dioxygenase (BenA) | B-IIαβ | Rhodococcus jostii RHA1 | BAB70698 | |
Salicylate 5-hydroxylase (NagG) | C-IIIαβ | Ralstonia sp. U2 | AAD12607 | |
Carbazole dioxygenase (CarAaII) | D-VIIα | Sphingomonas sp. KA1 | YP_717942 | |
3-Ketosteroid 9α-hydroxylase (KshA) | D-Iα | Mycobacterium tuberculosis H37rv | NP_218043 | |
Ferredoxin | AntAb associated with anthranilate dioxygenase | Rieske type [2Fe–2S] | Sphingomonas sp. KA1 | YP_717959 |
CarAcI associated with carbazole dioxygenase | Plant type [2Fe–2S] | Sphingomonas sp. KA1 | YP_717977 | |
PhtA3 associated with phthalate dioxygenase | [3Fe–4S] type | Terrabacter sp. DBF63 | BAC54160 | |
Rub1 associated with naphthalene 1,2-dioxygenase | Rubredoxin | Rhodococcus sp. P200 | AAR05110 | |
Reductase | KshB associated with 3-Ketosteroid 9α-hydroxylase | FNRc type | Rhodococcus erythropolis PR4 | BAH32483 |
CarAd associated with carbazole dioxygenase | FNRn type | Pseudomonas sp. XLDN4-9 | AAY56344 | |
FdrI associated with carbazole dioxygenase | GR type | Sphingomonas sp. KA1 | YP_718026 | |
HpaC associated with 4-hydroxyphenylacetate 3-monooxygenase | Flavin reductase | Thermus thermophilus HB8 | 2ECU_A | |
Rubredoxin-NAD(+) reductase | Rubredoxin reductase | Pseudomonas aeruginosa PAO1 | Q9HTK9 |