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Table 1 Description of candidate reference genes, and the details of primers and amplicons

From: Selection of reference genes from Shiraia bambusicola for RT-qPCR analysis under different culturing conditions

Gene

Description

Amplicon length (bp)

Primer sequence (5′ → 3′)

Efficiency (%)

R2

SbSAS1

GTP-binding protein SAS1

141

F: 5′-GCGATTCAGCGAAGACTCCT-3′

98

0.9998

R: 5′-ATGGTCCTGAAACGCTCCTG-3′

SbTRX

4A/4B type thioredoxin-like protein

184

F: 5′-TCAAGGCCATGTACGAGCTG-3′

100

1

R: 5′-ACTAGACCCCTGCCCTTCTT-3′

SbtS

t-SNARE

136 

F: 5′-CACACAGTCCAAGTTGCAGC-3′

97

0.9999

R: 5′-ATCGGTAGGTGATTGCGCAT-3′

SbJsn1

RNA binding protein-like protein Jsn1

175 

F: 5′-TGCCCAGAAGATCATCGACG-3′

101

0.9999

R: 5′-ACGGCCAAGCATAACCTCAA-3′

SbCHP

Conserved hypothetical protein

143 

F: 5′-TACGTCATTGGTGTCCGAGC-3′

102

0.9990

R: 5′-TTGCCTCGACATGGTCTTCC-3′

SbLAlv9

LAlv9 family protein

159 

F: 5′-TCCCCTCCAACAGCTCGATA-3′

97

0.9998

R: 5′-TGACGAAGCGATGCAGAAGT-3′

SbPKI

Pkinase-domain-containing protein

166 

F: 5′-TGCCGCCATACTTCCAACTT-3′

97

0.9999

R: 5′-TTATTTCCCGGAGAGCGGTG-3′

SbFYVE

FYVE-domain-containing protein

167 

F: 5′-GTGCAGGAGGATGGTTTGGA-3′

97

0.9998

R: 5′-ACGCCCACACATACGACAAT-3′

SbVAC55

Vacuolar protein sorting 55

151

F: 5′-GGCTGTCTTTCGTTCTTGCG-3′

98

0.9998

R: 5′-AAGTCATCCCGGTTAGCTGC-3′

UBI

Ubiquitin-activating enzyme

131

F: 5′-ATCGCTGGTCTGAGAGGTCT-3′

96

0.9997

R: 5′-GGGTGGAGGAAGAATTGCGA-3′

VAC

Vacuolar ATPase subunit 1

157

F: 5′-CCGTCATTGTTGCCGAGAAC-3′

99

0.9968

R: 5′-CACACCAGCAGTCTCTTCGT-3′

TFC

Transcription factor TFIIIC

170

F: 5′-CAAGGCCGAACTTAGCGATC-3′

101

0.9958

R: 5′-CCTCAGCATCACCGTCATTG-3′