Table 1 Rumen metagenome data assembly analysis statistics by using in house perl scripts
Parameters | Number of sequences |
|---|---|
Total number of bases uploaded | 147,749,531 |
Total number of sequences uploaded | 171,594 |
Mean sequence length bp uploaded | 838 ± 481 |
Mean GC count uploaded | 46 ± 10% |
Artificial duplicate reads | 14 |
Number of sequences failed QC | 9310 |
Total number of bases post QC | 125,833,189 |
Total number of sequences post QC | 162,284 |
Mean sequence length post QC | 775 ± 234 |
Mean GC count post QC | 45 ± 10% |
Predicted protein features | 201,967 |
Predicted rRNA features | 244 |
Identified protein features | 97,723 |
Identified functional categories | 58,691 |