Table 3 Genome completeness estimates and phylogenetic anchoring of the genomes reconstructed from the enrichment cultures UC1 and UC10, derived from the soil-compost mixture
From: Microbial communities in pyrene amended soil–compost mixture and fertilized soil
Genome completeness statistics computed by check using lineage specific marker gene sets | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Bin identifier | Marker lineage | Number of genomes | Number of markers | Number of marker sets | 0 | 1 | 2 | 3 | 4 | 5+ | Completeness [%] | Contamination [%] | Strain heterogeneity [%] |
Sphingopyxis | |||||||||||||
B4 | o__Sphingo-monadales (UID3310) | 26 | 569 | 293 | 4 | 556 | 9 | 0 | 0 | 0 | 99.50 | 2.29 | 0.00 |
Stenotrophomonas | |||||||||||||
B3 | f__Xantho-monadaceae (UID4214) | 55 | 659 | 290 | 6 | 652 | 1 | 0 | 0 | 0 | 98.72 | 0.34 | 0.00 |
Microbacterium | |||||||||||||
A2 | o__Actino-mycetales (UID1593) | 69 | 400 | 198 | 1 | 398 | 1 | 0 | 0 | 0 | 99.49 | 0.51 | 0.00 |
Mycobacterium | |||||||||||||
B2 | o__Actino-mycetales (UID1815) | 120 | 572 | 265 | 5 | 563 | 4 | 0 | 0 | 0 | 99.56 | 0.88 | 0.00 |