From: Microbial communities in pyrene amended soil–compost mixture and fertilized soil
Taxonomy | Statistics | Biology and PAH degradation potential | ||||
---|---|---|---|---|---|---|
Genus | Class | Phi coeff. | p value | Gram | Indications for PAH degradation | References |
Soil-compost mixture, 48 days incubation | ||||||
Arthrobacter | Actinobacteria | 0.786 | 0.035 | + | Nap, Phe | Daane et al. (2001); Kallimanis et al. (2007); Thion et al. (2012) |
Formosa | Flavobacteriia | 0.744 | 0.035 | − | − | − |
Gp21 | Acidobacteriia | 0.787 | 0.035 | − | Acidobacteria positively correlated with PAH removal | Xu et al. (2014) |
Lysobacter | Gammaproteo-bacteria | 0.721 | 0.035 | − | Nap, Phe | Maeda et al. (2009) |
Streptomyces | Actinobacteria | 0.801 | 0.035 | + | Nap, Phe | Balachandran et al. (2012) |
Tetrasphaera | Actinobacteria | 0.690 | 0.035 | + | − | − |
un_Propioni-bacteriaceae | Actinobacteria | 0.751 | 0.035 | + | ||
Fertilized soil, 46 days incubation | ||||||
Agromyces | Actinobacteria | 0.908 | 0.008 | + | (PAH enrichment) | HuiJie et al. (2011) |
Arenimonas | Gammaproteo-bacteria | 0.623 | 0.030 | − | (Isolated from oil conta-minated site) | Young et al. (2007) |
Bacillus | Bacilli | 0.560 | 0.037 | + | Nap, Ace, Ant, Flt, Pyr, B[e]p | e.g. Annweiler et al. (2000); Das and Mukherjee (2007); Feitkenhauer et al. (2003); Gauthier et al. (2003) |
Intrasporangium | Actinobacteria | 0.614 | 0.048 | + | − | − |
Luteimonas | Gammaproteo-bacteria | 0.859 | 0.008 | − | (Growing on mineral oil) | Borzenkov et al. (2014) |
Lysobacter | Gammaproteo-bacteria | 0.940 | 0.008 | − | Nap, Phe | Maeda et al. (2009) |
Mesorhizobium | Alphaproteo-bacteria | 0.675 | 0.035 | − | Flu, Phe | Wang et al. (2008) |
Microbacterium | Actinobacteria | 0.800 | 0.026 | + | Phe, Pyr, Chr | |
Mycobacterium | Actinobacteria | 0.847 | 0.008 | + | Nap, Flu, Phe, Ant, Flt, Pyr, B[a]p | e.g. Bogan et al. (2003); Derz (2004); Heitkamp et al. (1988); Hennessee et al. (2009); Kästner et al. (1994); Willumsen et al. (2001) |
Novosphingobium | Alphaproteo-bacteria | 0.819 | 0.008 | − | Flu, Phe, Ant, Flt, Pyr, B[a]a, Chr, B[b]f, B[a]p | |
Phenylobacterium | Alphaproteo-bacteria | 0.745 | 0.019 | − | (enriched in crude oil amended soil) | Yang et al. (2014) |
Pseudo-xanthomonas | Gammaproteo-bacteria | 0.891 | 0.010 | − | Phe | Patel et al. (2012) |
Solitalea | Sphingo-bacteriia | 0.755 | 0.017 | − | − | − |
Sphingomonas | Alphaproteo-bacteria | 0.802 | 0.023 | − | Nap, Acy, Ace, Phe, Ant, Flt, Pyr, Chr, B[a]p | e.g. Coppotelli et al. (2010); Kästner et al. (1994); Mueller et al. (1990); Navarro et al. (2008); Pinyakong et al. (2004); Willison (2004); Zhou et al. (2006) |
Sporosarcina | Bacilli | 0.739 | 0.013 | + | − | − |
Subtercola | Actinobacteria | 0.793 | 0.008 | + | − | − |
un_Caulo-bacteraceae | Alphaproteo-bacteria | 0.823 | 0.012 | − | ||
un_Cysto-bacteraceae | Deltaproteo-bacteria | 0.740 | 0.032 | − | ||
un_Phyllo-bacteriaceae | Alphaproteo-bacteria | 0.819 | 0.008 | − |