From: Degeneration of aflatoxin gene clusters in Aspergillus flavus from Africa and North America
Clustera | Geneb | Genotype (%)c | Synonymous SNPsd | Non-synonymous SNPsd | Nonsense SNPse |
---|---|---|---|---|---|
Early genes | norB | 19 (54) | 0–3 (43) | 0–2 (49) | 0 |
cypA | 19 (54) | 0–3 (43) | 0–5 (43) | 0–1 (49) | |
aflT | 17 (49) | 0–3 (43) | 0–4 (43) | 0 | |
pksA | 17 (49) | 6–18 (40) | 3–16 (40) | 0–1 (3)f | |
nor-1 | 17 (49) | 0–1 (6) | 0–1 (3) | 0 | |
hexA | 17 (49) | 5–18 (40) | 2–15 (40) | 0 | |
hexB | 17 (49) | 9–20 (49) | 7–15 (49) | 0 | |
aflR | 17 (49) | 1–3 (49) | 1–3 (49) | 0 | |
aflJ | 19 (54) | 2–9 (51) | 0–2 (51) | 0–1 (3) | |
adhA | 19 (54) | 1–2 (54) | 1–4 (49) | 0 | |
estA | 19 (54) | 2–6 (54) | 1–3 (54) | 0 | |
norA | 24 (69) | 0–5 (46) | 0–3 (46) | 0–1 (3) | |
ver - 1 | 25 (71) | 0–5 (63) | 0–2 (57) | 0 | |
Late genes | verA | 25 (71) | 0–37 (69) | 1–19 (71) | 0 |
avnA | 27 (77) | 2–5 (77) | 2–5 (77) | 0 | |
verB | 25 (71) | 0–5 (69) | 1–3 (71) | 0 | |
avfA | 25 (71) | 0–4 (57) | 0–4 (63) | 0 | |
omtB | 26 (74) | 0–6 (57) | 1–3 (63) | 0 | |
omtA | 26 (74) | 0–7 (66) | 0–4 (71) | 0–1 (3) | |
ordA | 26 (74) | 0–9 (63) | 0–6 (57) | 0 | |
vbs | 26 (74) | 1–12 (74) | 1–6 (74) | 0–1 (3) | |
cypX | 26 (74) | 1–11 (74) | 1–3 (74) | 0 | |
moxY | 26 (74) | 0–7 (69) | 1–8 (74) | 0 | |
ordB | 26 (74) | 0–2 (69) | 0–2 (66) | 0–1 (14) | |
hypA | 26 (74) | 2–5 (74) | 1–6 (74) | 0–1 (14) | |
Sugar cluster | nada | 26 (74) | 1–2 (74) | 1–6 (74) | 0–3 (63) |
hxtA | 35 (100) | 0–5 (89) | 1–2 (100) | 0 | |
glcA | 35 (100) | 1–3 (100) | 2–3 (100) | 0 | |
sugR | 35 (100) | 1–5 (100) | 0–4 (77) | 0–1 (14) | |
orf | 35 (100) | 0–3 (83) | 1–2 (100) | 0 |