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AMB Express

Table 7 Expression counts of ten highly expressed transcripts from the NBS-LRR family

From: Deep RNA-Seq profile reveals biodiversity, plant–microbe interactions and a large family of NBS-LRR resistance genes in walnut (Juglans regia) tissues

Transcript

CE

CI

CK

EM

FL

HC

HL

HP

HU

IF

LE

LM

LY

PK

PL

PT

RT

SE

TZ

VB

L

C54426_G7_I1

9.9

19.7

1.2

0

2.8

26.2

3.5

23

0.2

1.2

0.9

0.7

3.2

2.8

0.5

1.4

4.5

0.2

1.2

1

745

C50016_G1_I3

0.9

2.2

2.6

1.3

8

2.3

18.9

1.5

1.5

9

8.1

0.4

7.6

0.6

0.7

8.6

2.4

1.9

0.2

3.3

1026

C52820_G1_I1

1.7

4.6

3.8

2.4

14.3

2.5

1 0

2.8

0.6

7.9

2.6

0.4

3.1

2.4

1.4

12.3

1.4

4.5

1.1

3.1

1010

C8180_G1_I1

1.3

2.8

0.8

0.4

8.1

3

25.2

1.5

5

13.9

2.4

0

3.8

0.1

0.3

17.2

1.6

0.5

0

2

668

C55004_G7_I2

2

4.4

2.2

2.5

9.2

3.9

11.9

3.3

3.1

5.6

7.3

3.1

8.3

3.2

1.5

6.2

3.6

2

1.7

3.9

767

C49942_G2_I1

2.7

6.7

2.2

3

1.3

14.8

7

4.8

7.4

2.9

1.3

2.7

1.3

6.5

5.1

4.2

3.2

2.8

5.5

0.8

669

C47067_G1_I2

1.1

2.6

1.1

0.3

8.2

2

7.5

1.3

1.4

5.9

6.4

1

9

4.4

7

11.2

2.4

1.3

1.4

3.6

677

C44186_G1_I3

1.7

2.5

4.5

0.5

5.7

2

15.2

1.2

6

6.4

7.9

2.1

7.2

1

0.7

9.3

5.9

0.9

0.1

4.3

1034

C44186_G1_I1

1.9

2.6

4.6

0.6

5.4

2.1

14.8

1.5

6.8

6.6

8.1

2.2

7.3

1.2

0.8

9.1

5.4

0.9

0.1

4.1

659

C51189_G5_I1

5

10.3

4.1

3.5

16.5

3.6

19.1

3

21.3

10.6

9.5

1.5

10.8

6.5

2.7

14.9

5.9

6.5

2.7

6

1017

  1. These are raw counts in K (103), and are not normalized. Some NBS-LRR’s (like C54426_G7 _I1, a Strubbelig receptor kinase) are significantly overexpressed in specific tissues
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