Deep RNA-Seq profile reveals biodiversity, plant–microbe interactions and a large family of NBS-LRR resistance genes in walnut (Juglans regia) tissues

AMB Express

Table 5 Species from Actinobacteria

Taxonomy name	ID	Lineage
Arthrobacter	1663	Bacteria; Actinobacteria; Actinobacteria; Micrococcales; Micrococcaceae
Modestobacter	88138	Bacteria; Actinobacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae
Microlunatus	29404	Bacteria; Actinobacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae
Actinoplanes	1865	Bacteria; Actinobacteria; Actinobacteria; Micromonosporales; Micromonosporaceae
Nakamurella	53460	Bacteria; Actinobacteria; Actinobacteria; Nakamurellales; Nakamurellaceae
Streptomyces	1883	Bacteria; Actinobacteria; Actinobacteria; Streptomycetales; Streptomycetaceae
Propionibacterium	1743	Bacteria; Actinobacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae
Corynebacterium	1716	Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae
Micrococcus	1269	Bacteria; Actinobacteria; Actinobacteria; Micrococcales; Micrococcaceae

We obtain the taxonomy ID from http://www.ncbi.nlm.nih.gov/Taxonomy/TaxIdentier/tax_identifer.cgi using the taxonomy name, which is then used to get the lineage. The taxonomy names were obtained from best entry in a BLAST search to the ‘nt’ database