Deep RNA-Seq profile reveals biodiversity, plant–microbe interactions and a large family of NBS-LRR resistance genes in walnut (Juglans regia) tissues

Chakraborty, Sandeep; Britton, Monica; Martínez-García, P. J.; Dandekar, Abhaya M.

doi:10.1186/s13568-016-0182-3

AMB Express

Table 4 Transcripts from fungi

From: Deep RNA-Seq profile reveals biodiversity, plant–microbe interactions and a large family of NBS-LRR resistance genes in walnut (Juglans regia) tissues

Transcript	Description	E-value
a
C44240_G2_I1	KGB78973.1 ADP/ATP translocase [Cryptococcus gattii R265]	3e-91
C8003_G1_I1	XM_571019.1 C. neoformans var. neoformans JEC21 60 s ribosomal protein	3e-98
C28542_G1_I1	XP 003191240.1 40 s ribosomal protein s3ae-a (s1-a) [Cryptococcus gattii WM276]	3e-91
C9244_G1_I1	XM_569612.1 C. neoformans var. neoformans JEC21 40S ribosomal protein	3e-119
C8207_G1_I1	KGB74187.1 cyclophilin A, peptidyl-prolyl isomerase [Cryptococcus gattii R265]	5e-82
C61284_G1_I1	KGB74302.1 60S ribosomal protein L10 [Cryptococcus gattii R265]	1e-76
C60498_G1_I1	AFR92589.1 glutamine synthetase [Cryptococcus neoformans var. grubii H99]	9e-51
b
C6553_G1_I1	XM_001932117.1 P. tritici-repentis Pt-1C-BFP subtilase-type proteinase	6e-130
C35196_G1_I1	XM_001932926.1 P. tritici-repentis Pt-1C-BFP 60S ribosomal protein	0.0
C50331_G1_I4	XM_001930633.1 P. tritici-repentis Pt-1C-BFP hypothetical protein	9e-125
C34393 _G1_I1	XM_003296940.1 P. teres f. teres 0-1 ubiquitin-40S ribosomal protein	1e-101
C50331_G1_I5	XM_001930633.1 P. tritici-repentis Pt-1C-BFP hypothetical protein	1e-133
C58663_G1_I1	XM_001937272.1 P. tritici-repentis Pt-1C-BFP opsin-1, mRNA	3e-69
C29801_G1_I1	XM_001936103.1 P. tritici-repentis Pt-1C-BFP conserved hypothetical	1e-57
C30295_G1_I1	XM_003306030.1 P. teres f. teres 0-1 hypothetical protein, mRNA	2e-70
C16207_G1_I1	XM_001935967.1 P. tritici-repentis Pt-1C-BFP conserved hypothetical	7e-97
C50331_G1_I2	XM_001930633.1 P. tritici-repentis Pt-1C-BFP hypothetical protein	1e-122

a Cryptococcus is the causal agent of the human/animal respiratory disease cryptococcosis. These fungi are mostly localized in the catkins and the vegetative bud in walnut, corroborating previous results indicating that the plant surface provides a conducive environment for their sexual cycle. Here, we see two different species: C. neoformans var. neoformans and C. gattii. b The ‘tan spot’ causing pathogenic fungi Pyrenophora had two different strains present: P. tritici-repentis and P. teres f. teres

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