Deep RNA-Seq profile reveals biodiversity, plant–microbe interactions and a large family of NBS-LRR resistance genes in walnut (Juglans regia) tissues

AMB Express

Table 1 Walnut tissue sources used for RNAseq analysis

Code	Tissue source	Sequence read archive	Walnut genotype	Developmental stage	Source	No of reads x10⁶
VB	Vegetative bud	SRS523592	Chandler	Vegetative	Orchard	39.9
LY	Leaf—young	SRS523594	Chandler	Vegetative	Orchard	63.3
RT	Root	SRS523799	Chandler	Vegetative	Greenhouse	38.8
CI	Callus interior	SRS523805	Chandler	Vegetative	In Vitro	59.3
CE	Callus exterior	SRS523808	Chandler	Vegetative	In Vitro	29.8
FL	Pistillate flower	SRS523810	Chandler	Vegetative	Orchard	69.8
CK	Catkins	SRS523917	Chandler	Immature	Orchard	56.4
SE	Somatic embryo	SRS523919	Chandler	Immature	In Vitro	27.8
LM	Leaf—mature	SRS523921	Chandler	Vegetative	Orchard	50.4
LE	Leaves	SRS523922	Chandler	Vegetative	Orchard	60.1
IF	Fruit immature	SRS523923	Mixed	Immature	Orchard	57.0
HL	Hull immature	SRS523924	Chandler	Immature	Orchard	115.8
PT	Packing tissue	SRS523925	Chandler	Immature	Orchard	62.8
HP	Hull peel	SRS523926	Chandler	Mature	Orchard	43.3
HC	Hull cortex	SRS523927	Chandler	Mature	Orchard	62.8
PK	Packing tissue	SRS523928	Chandler	Mature	Orchard	56.7
PL	Pellicle	SRS523929	Chandler	Mature	Orchard	42.7
EM	Embryo	SRS523930	Mixed	Mature	Orchard	35.5
HU	Hull—dehiscing	SRS523931	Chandler	Senescent	Orchard	59.5
TZ	Transition wood	SRS523933	J.nigra	Transition zone	Orchard	48.4
				Total number of reads:		1080.0