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AMB Express
Fig. 4 | AMB Express

Fig. 4

From: Deep RNA-Seq profile reveals biodiversity, plant–microbe interactions and a large family of NBS-LRR resistance genes in walnut (Juglans regia) tissues

Fig. 4

Nucleotide-binding site (NBS) and leucine-rich repeats (LRR) in walnut. a Amino acid frequency for two NBS-LRRs. The blast-resistance gene Pb1 NBS-LRR from rice (Uniprot: E3WF10) is in red, while the cyst nematode resistance gene from tomato (Uniprot: Q8GT46) is in green. While, expectedly, both these proteins are leucine rich, we also observe a large proportion of negatively charged glumatic acid. b Phylogenetic tree for the ~400 identified NBS-LRR genes in walnut obtained by Neighbor Joining/UPGMA phylogeny implemented in MAFFT (Katoh et al. 2002) and drawn with FigTree v1.4.2

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