Exoproteome analysis of Clostridium cellulovorans in natural soft-biomass degradation

AMB Express

Table 1 The list of biomass-specific proteins

Biomass specifically	Protein type	Locus	Name ^a	CAZy family(ies) ^b	vs Cellobiose		emPAI ^d
Biomass specifically	Protein type	Locus	Name ^a	CAZy family(ies) ^b	log ₂ -fold change	FDR-adjusted P- value ^c	emPAI ^d
Bagasse (4)	Cellulosomal	Clocel_2820	HbpA	NA	1.45	9.13E-03	2.49
	Non-cellulosomal	Clocel_1430		GH31	1.19	9.13E-03	0.55
		Clocel_3197		GH130	1.71	1.37E-02	0.79
		Clocel_0873		PL9	1.07	9.13E-03	1.19
Corn germ (11)	Cellulosomal	Clocel_3650		GH44	1.45	4.39E-04	0.53
	Non-cellulosomal	Clocel_1018		GH1	1.41	2.85E-03	0.77
		Clocel_1019		GH1	3.29	4.39E-04	0.34
		Clocel_2606		GH5,CBM46	1.36	5.78E-03	2.44
		Clocel_0034		GH31	1.46	2.48E-03	0.51
		Clocel_2535		GH43	1.09	1.38E-02	0.20
		Clocel_1455		GH53,CBM61,CBM61,CBM61	2.03	4.39E-04	0.13
		Clocel_0032		GH94	1.83	4.50E-03	0.36
		Clocel_3197		GH130	2.46	6.34E-04	0.79
		Clocel_1172		PL1	1.41	1.38E-02	0.50
		Clocel_2249		NA	1.18	3.00E-02	1.01
Rice straw (6)	Cellulosomal	Clocel_2295	XynA	GH11,CE4	1.79	2.64E-02	0.69
		Clocel_0148		NA	1.59	1.24E-03	0.65
		Clocel_0147	CpiA	NA	1.3	2.72E-03	9.10
		Clocel_2820	HbpA	NA	1.43	3.46E-03	2.49
	Non-cellulosomal	Clocel_3197		GH130	2.63	9.16E-04	0.79
	Non-cellulosomal	Clocel_0590		NA	1.19	7.51E-03	5.27

^aName: Names of only the reported proteins were shown.
^bSee http://www.cazy.org/. NA, not annotated (not included in CAZy database).
^c P-values were adjusted for multiple testing with the Benjamini-Hochberg method.
^demPAI: the values of exponentially modified protein abundance index.