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AMB Express
Figure 2 | AMB Express

Figure 2

From: Changes and recovery of soil bacterial communities influenced by biological soil disinfestation as compared with chloropicrin-treatment

Figure 2

Neighbor-joining trees showing the phylogenetic relationships of all OTUs derived from the clone libraries Pre-treatment, UTC-Spinach, BSD-Spinach, and CP-Spinach based on 16S rRNA gene sequences for (a) the phylum Proteobacteria ; (b) other phyla ( Firmicutes , Acidobacteria , Verrucomicrobia , Bacteroidetes , Planctomycetes , Gemmatimonadetes , TM7 and others, Actinobacteria , and Chloroflexi ). Designation of clone names with FS, CA, WA, and CPA (deposited in the DDBJ/Genbank) corresponds to the clones belonging to the Pre-treatment, UTC-Spinach, BSD-Spinach, and CP-Spinach clone libraries, respectively. The squares marked with some clone clusters show the recovery of the bacterial groups found in the original soil for the BSD-treatment but not for the CP. As the outgroups, 16S rRNA gene sequence of Bacillus subtilis DSM10 and Sulfolobus acidocaldarius (the domain Archaea) were used for (a) and (b), respectively. Tree construction and other notifications are similar as described in Figure 1.

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