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AMB Express

Table 3 Sequence comparison of Holothuroidin 2 with other AMPs

From: Immune mediators of sea-cucumber Holothuria tubulosa (Echinodermata) as source of novel antimicrobial and anti-staphylococcal biofilm agents

Peptides

Sequence

Similarity (%)

Species

Holothurioidin 2

       ASH L GHHA             L DH L    LK 

 

Holothuria tubulosa

Frenatin 3

     GLMSV L G + HAVGNV L GG L    FKS   

38.09

Litoria infrafrenata (Raftery et al. 1996)

Signiferin 2.2

 IIGH L IKTA              L GF L GL+

37.5

Crinia signifera (Maselli et al. 2004)

Signiferin 2.1

 IIGH L IKTA              L GM L GL+

37.5

Crinia signifera (Maselli et al. 2004)

Temporin 1Ja

       ILP L VG+N          L L ND+ L L+  

37.5

Rana japonica (Isaacson et al. 2002)

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