Target ORF | Primer name | Primer sequence (5’ → 3’) | Application/purpose |
---|---|---|---|
PnpE1 | pnpE1_F | GGGGACAAGTTTGTACAAAAAAGCAGGCTTAATGGGCCGACATCTGCAT | HqD Large subunit amplification |
pnpE1_R | GGGGACCACTTTGTACAAGAAAGCTGGGTATTAGAACGCGACCGGATA | ||
PnpE2 | pnpE2-F | GGGGACAAGTTTGTACAAAAAAGCAGGCTTAATGGAGACAGACATGCAA | HqD Small subunit amplification |
pnpE2-R | GGGGACCACTTTGTACAAGAAAGCTGGGTATTACTGGATGCAGATGTC | ||
PnpE1 | pnpE1-RT_F | TCTACGGCTGGGTCAATTTC | HqD large subunit RT-PCR primer |
pnpE1-RT_R | CTTCGTTCACCCAGTCCTTC | ||
PnpE2 | pnpE2-RT_F | CGCATTACGTGATGTCCAAC | HqD Small subunit RT-PCR primer |
pnpE2-RT_R | GTTTCACCGAGCCTTCGATA | ||
PnpD | HqD_F | AGGAGTTCATCCTGCT(G/C)(A/T)G | Partial BtD gene amplification |
HqD_R | CGCAC(GC)CCGAACAC(A/T)GCGTC |