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Table 1 Literature references grouped by formalism

From: Modeling formalisms in Systems Biology

  BN Bay PN PA CB DE RB ISM CA AB
Signaling + + ++ ++ + ++ ++ ++ + ++
Gene regulatory ++ ++ +   + ++    +  
Metabolic    ++   ++ ++    + +
  1. Overview of the amount of literature references for each formalism classified by the type of biological process. (+) Few references; (++) Several references; (BN) Boolean networks; (Bay) Bayesian networks; (PN) Petri nets; (PA) Process algebras; (CB) Constraint-based models; (DE) Differential equations; (RB) Rule-based models; (ISM) Interacting state machines; (CA) Cellular automata; (AB) Agent-based models.