| BN | Bay | PN | PA | CB | DE | RB | ISM | CA | AB |
---|
Signaling | + | + | ++ | ++ | + | ++ | ++ | ++ | + | ++ |
Gene regulatory | ++ | ++ | + | Â | + | ++ | Â | Â | + | Â |
Metabolic | Â | Â | ++ | Â | ++ | ++ | Â | Â | + | + |
- Overview of the amount of literature references for each formalism classified by the type of biological process. (+) Few references; (++) Several references; (BN) Boolean networks; (Bay) Bayesian networks; (PN) Petri nets; (PA) Process algebras; (CB) Constraint-based models; (DE) Differential equations; (RB) Rule-based models; (ISM) Interacting state machines; (CA) Cellular automata; (AB) Agent-based models.