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Table 1 Literature references grouped by formalism

From: Modeling formalisms in Systems Biology

 

BN

Bay

PN

PA

CB

DE

RB

ISM

CA

AB

Signaling

+

+

++

++

+

++

++

++

+

++

Gene regulatory

++

++

+

 

+

++

  

+

 

Metabolic

  

++

 

++

++

  

+

+

  1. Overview of the amount of literature references for each formalism classified by the type of biological process. (+) Few references; (++) Several references; (BN) Boolean networks; (Bay) Bayesian networks; (PN) Petri nets; (PA) Process algebras; (CB) Constraint-based models; (DE) Differential equations; (RB) Rule-based models; (ISM) Interacting state machines; (CA) Cellular automata; (AB) Agent-based models.